RNAi (RNA interference) defined

RNA interference (RNAi) is a natural process that cells use to 'turn off' or silence unwanted or harmful genes. The initial discovery of this phenomenon was in 1991, by scientists trying to deepen the colour of petunias. Surprisingly, by introducing a gene for colour, they found that they had turned off the gene.  

The process

Several years after the petunia experiments, the mechanism of RNA interference was revealed: it is triggered by double-stranded RNA (dsRNA), not usually found in healthy cells, but needed to turn genes off, if the cell is threatened or damaged by invading viruses.

In natural RNA interference, dsRNA in the cell’s cytoplasm is cut by an enzyme called Dicer into double stranded small interfering RNA (siRNA) molecules which are 20-25 nucleotides long. This siRNA binds to an RNA-Induced Silencing Complex (RISC) which separates the two strands into the passenger and guide strand. The passenger strand is degraded while the RISC takes the guide strand to a specific mRNA site, cleaving it so that the unwanted target protein is not produced. This is how the gene is ‘silenced’.

Gene silencing by RNAi

These are the stages of the process as it pertains to disease control:

siRNA and shRNA

The RNAi pathway is initiated when dsRNA enters the cytoplasm. The source of the dsRNA may be:

In the synthetic approach, the molecule is introduced into the cytoplasm of the cell where it is usually quickly degraded. To gain effects lasting longer than a few days, repeat ongoing administration is needed.

In the ddRNAi approach, the shRNA is produced by the cell itself, as a result of the operation of the DNA construct which is delivered to the nucleus, and becomes part of the cell’s own DNA. The resultant gene silencing effect can last months or years, because the cell continues to manufacture its own DNA-directed shRNA to participate in the RNAi pathway.